PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG228900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26362.9 Da    PI: 6.5237
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG228900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.8e-241260250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         rien+  rqvtfskR+ g+ KKA EL vLCda+va+i+fs +g+l++++
  Pavir.3NG228900.1.p 12 RIENSVSRQVTFSKRLRGLAKKARELAVLCDADVALIVFSDKGRLHDFA 60
                         8**********************************************97 PP

2K-box87.42.9e-29901761197
                K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                          e+ + +++ e+ kLk+++e Lq++qR+l+Ge+LesL+++e qqLeqq++++l++iRs+K+++l+++ieel+kke+ l e+n+ L+k+
  Pavir.3NG228900.1.p  90 EEMEGNMSYEHIKLKSKVEALQKSQRNLMGEQLESLTFREVQQLEQQIDSALRNIRSRKDHVLFNSIEELRKKERFLMEQNTLLEKE 176
                          566789****************************************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.931363IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-29362IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-28486IPR002100Transcription factor, MADS-box
CDDcd002651.43E-35476No hitNo description
PRINTSPR004041.4E-25525IPR002100Transcription factor, MADS-box
PfamPF003192.0E-231259IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-254061IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2591176IPR002487Transcription factor, K-box
PROSITE profilePS5129715.5893183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGRGKVEV RRIENSVSRQ VTFSKRLRGL AKKARELAVL CDADVALIVF SDKGRLHDFA  60
AHDGSMERIL DRYERYLLCE GGDVMENHPE EMEGNMSYEH IKLKSKVEAL QKSQRNLMGE  120
QLESLTFREV QQLEQQIDSA LRNIRSRKDH VLFNSIEELR KKERFLMEQN TLLEKEKAAL  180
DPSLHAKNSA ASSTSAQGAV PNLNICAGGG SDDEPAPPAA PYGAEAGLPW WMLEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S6e-17476272Myocyte-specific enhancer factor 2B
1tqe_R6e-17476272Myocyte-specific enhancer factor 2B
1tqe_Q6e-17476272Myocyte-specific enhancer factor 2B
1tqe_P6e-17476272Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9750671e-172EU975067.1 Zea mays clone 466497 MADS-box transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962945.11e-138PREDICTED: MADS-box transcription factor 20-like
SwissprotQ2QQA33e-79MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLK7TJJ01e-110K7TJJ0_MAIZE; Putative MADS-box transcription factor family protein
STRINGSi025315m7e-95(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146432121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-55AGAMOUS-like 8